ContentsManagement of Pipeline ReportsEach pipeline run produces one report. The pipeline reports are stored on the server and are accessible for the group that was defined in the pipeline script. To view and manage the reports use the normal login mode of SeqSphere+ client and use the menu item Tools | Browse Pipeline Reports A table of all visible pipeline reports is shown. Pipeline reports are periodically delivered by the pipeline, therefore you may also see reports of running pipelines in this table. Use the Reload Reports button to update the table. Double-click or use the View Report button to open a pipeline report. The Export Report button can be used to export the report into a proprietary file, that can be opened by any SeqSphere client. The Cancel button can be used to send a stop signal to a running pipeline. Pipeline Report ChaptersOverviewShows a summary of the pipeline results. If Early Warning Alerts (EWA) are defined in the project and an EW-Alert has been triggered for samples processed by the pipeline, an EWA icon and warning is shown in the bottom of the overview. Open Samples button to open one or more Samples. Processed SamplesShows a table with all Samples that were processed, even if they failed and were not imported. Double-click or use the The columns of the table contain important QC fields and, if defined in the project, the results for the Early Warning Alerts and Local Single Linkage Clustering IDs. Log MessagesAll log messages that were reported while the pipeline was running. The log messages for each Sample are also added to the Sample and are shown in the Procedure tab of the Sample Overview. ScriptShows an overview of the pipeline script and allows to export the script. The export is useful if you want to transfer a script to another SeqSphere+ client computer to run it concurrently for scaling up. |