Please Note: Working with Plasmid Tables requires the Long-read Data Plasmid Transmission Analysis Module
The plasmid table displays plasmids from Mash Plasmid Typing searches, from Plasmid Early Warning Alerts, or from a snapshot of another plasmid table.
For each plasmid, there is a row that displays plasmid name, Sample ID, Project, Sample fields and mob-suite results.
The following functions can be used:
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Export Table: Export the table.
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Save Plasmid Table Snapshot: Create a snapshot of the plasmid table. The snapshots can be opened using the menu command Tools > Comparison Table. Note that it is not possible to search for similar plasmids when opening the snapshots.
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Add Additional Database Fields as Columns.
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Remove Selected Row(s) from table. Note: This will not remove the plasmids permanently from the database, only the rows from the table will be removed.
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Remove Unselected Row(s) from Table. Note: This will not remove the plasmids permanently from the database, only the rows from the table will be removed.
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Export Contigs to File: Reads the plasmid contigs from the Sample attachment and saves them to a FASTA-file.
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Open Selected Sample(s).
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Open Selected Sample(s) in Comparison Table.
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Visualize plasmids with pyGenomeViz. Metadata from the "Chromosome & Plasmid Overview" (rep(s) in green), "NCBI AMRFinderPlus" (AMR priority genes: red, other orange) and "CGE MobileElementFinder" (light blue) are included as genes in the visualization.
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Search Similar Plasmids in Mash Database.
Plasmid Tables that are created for similarity search or Plasmid Early Warning Alerts have the option to do a 
clustering of the plasmids in the table.