A list of antibiotics is predefined in SeqSphere+ for storing phenotypic AMR results.
The predefined antimicrobial fields can be chosen for database scheme, new ones can also be created.
For each antibiotic a test result consisting of 8 sub-fields can be stored in the database:
Sub-Field
|
Predefined Items
|
Allows Free Text
|
Mandatory
|
Description
|
Interpretation
|
Resistant, Intermediate, Susceptible
|
no
|
yes
|
General interpretation of testing results
|
Test Method
|
Disk diffusion, MIC
|
yes
|
no
|
General method for testing
|
Vendor
|
Biomerieux, Becton Dickinson, Siemens Healthcare, Oxoid
|
yes
|
no
|
Company producing testing method
|
Platform
|
VITEK 2, Etest, Phoenix, MicroScan, Antimicrobial paper discs
|
yes
|
no
|
Testing platform
|
Reagent
|
|
yes
|
no
|
Specific type
|
Numeric Result
|
Inhibition diameter, Concentration
|
yes
|
no
|
Result of the test
|
Units
|
mm, micrograms
|
yes
|
no
|
Units of the test
|
Comment
|
|
yes
|
no
|
General comment on the test
|
Only the sub-field Interpretation can be imported when using the Import Epi Metadata function.